Problem Set 5 - Mutation hunting
Overview
Data files and code templates for this problem set are available on comet at:
/oasis/projects/nsf/csd524/mgymrek/data/ps5/
/oasis/projects/nsf/csd524/mgymrek/templates/ps5/
mkdir /oasis/projects/nsf/csd524/$USER/ps5
mkdir /oasis/projects/nsf/csd524/$USER/ps5/code
mkdir /oasis/projects/nsf/csd524/$USER/ps5/results
PS5 data
The data directory contains the following files you will use in the problem set:1kg_phase3_exome_ceu_all_vep.vcf.gz
1kg_phase3_exome_ceu_all_vep.vcf.tab
PS5 templates
The templates directory contains the following scripts you'll find useful to get started.run_ps5_template.sh
count_greater_than_zero.py